Got a few more things done tonight. Ran the emissions harness to the back, put in the starter, ran the power leads for the alternator and starter, mounted the TCM and ECM and started making sense of the wiring up that way. Lastly I tried to put the intake tube on so I wouldn't have the throttle body open to the air while it sits. Turns out the clearance for the hard rock hood is not enough to fit the intake runner and the alternator. I'll likely end up dabbing something up when I get the grill/radiator put back on so I know what I'm working with.